HL_8OIT_001

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAAUAA

Length

7 nucleotides

Bulged bases

8OIT|1|AG|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIT_001 not in the Motif Atlas

Geometric match to HL_3AL0_001

Geometric discrepancy: 0.2199

The information below is about HL_3AL0_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8OIT|1|AG|U|13
8OIT|1|AG|A|14
8OIT|1|AG|A|15
8OIT|1|AG|A|16
8OIT|1|AG|U|17
8OIT|1|AG|A|18
8OIT|1|AG|A|19

Current chains

Chain AG

P-site Met-tRNA(Met)

Nearby chains

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain Bg

Growth arrest and DNA damage-inducible proteins-interacting protein 1