HL_8OIT_009
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGAGC
- Length
- 6 nucleotides
- Bulged bases
- 8OIT|1|B8|G|216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIT_009 not in the Motif Atlas
- Geometric match to HL_5J7L_143
- Geometric discrepancy: 0.1771
- The information below is about HL_5J7L_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
8OIT|1|B8|G|214
8OIT|1|B8|A|215
8OIT|1|B8|G|216
8OIT|1|B8|A|217
8OIT|1|B8|G|218
8OIT|1|B8|C|219
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BN
- 39S ribosomal protein L4, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
- Chain Bx
- 39S ribosomal protein L49, mitochondrial
- Chain Bz
- 39S ribosomal protein L51, mitochondrial
Coloring options: