HL_8OIT_038

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIT_038 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1275

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8OIT|1|B8|A|1411
8OIT|1|B8|G|1412
8OIT|1|B8|U|1413
8OIT|1|B8|A|1414
8OIT|1|B8|A|1415
8OIT|1|B8|U|1416

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain BL

39S ribosomal protein L2, mitochondrial