HL_8OJ0_002
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAACCA
- Length
- 6 nucleotides
- Bulged bases
- 8OJ0|1|5|C|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OJ0_002 not in the Motif Atlas
- Homologous match to HL_8C3A_002
- Geometric discrepancy: 0.1828
- The information below is about HL_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8OJ0|1|5|U|68
8OJ0|1|5|A|69
8OJ0|1|5|A|70
8OJ0|1|5|C|71
8OJ0|1|5|C|72
8OJ0|1|5|A|73
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- E3 UFM1-protein ligase 1
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Li
- 60S ribosomal protein L36
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