HL_8OJ0_022

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8OJ0|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ0_022 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.5834

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8OJ0|1|5|C|1816
8OJ0|1|5|U|1817
8OJ0|1|5|G|1818
8OJ0|1|5|G|1819
8OJ0|1|5|C|1820
8OJ0|1|5|G|1821
8OJ0|1|5|U|1822
8OJ0|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29