HL_8OJ0_044

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ0_044 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.1411

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OJ0|1|5|A|3724
8OJ0|1|5|G|3725
8OJ0|1|5|A|3726
8OJ0|1|5|A|3727
8OJ0|1|5|A|3728
8OJ0|1|5|U|3729

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain Lz

60S ribosomal protein L10a