HL_8OJ0_049
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8OJ0|1|5|G|4195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OJ0_049 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.0928
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8OJ0|1|5|C|4193
8OJ0|1|5|U|4194
8OJ0|1|5|G|4195
8OJ0|1|5|G|4196
8OJ0|1|5|G|4197
8OJ0|1|5|G|4198
8OJ0|1|5|C|4199
8OJ0|1|5|G|4200
8OJ0|1|5|G|4201
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- E3 UFM1-protein ligase 1
- Chain LI
- Ribosomal protein uL16-like
- Chain Lb
- 60S ribosomal protein L29
Coloring options: