HL_8OJ0_056
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OJ0_056 not in the Motif Atlas
- Homologous match to HL_8P9A_172
- Geometric discrepancy: 0.1331
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8OJ0|1|5|C|4417
8OJ0|1|5|G|4418
8OJ0|1|5|U|4419
8OJ0|1|5|U|4420
8OJ0|1|5|C|4421
8OJ0|1|5|A|4422
8OJ0|1|5|U|4423
8OJ0|1|5|A|4424
8OJ0|1|5|G|4425
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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