HL_8OJ8_012

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCG

Length

5 nucleotides

Bulged bases

8OJ8|1|5|G|642

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_012 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1268

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8OJ8|1|5|C|517
8OJ8|1|5|G|518
8OJ8|1|5|G|642
8OJ8|1|5|C|643
8OJ8|1|5|G|644

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13