HL_8OJ8_032

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_032 not in the Motif Atlas

Geometric match to HL_1M5K_003

Geometric discrepancy: 0.2581

The information below is about HL_1M5K_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OJ8|1|5|C|2561
8OJ8|1|5|G|2562
8OJ8|1|5|C|2563
8OJ8|1|5|G|2564
8OJ8|1|5|A|2565
8OJ8|1|5|G|2566

Current chains

Chain 5

28S rRNA

Nearby chains