HL_8OJ8_044

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8OJ8|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ8_044 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4112

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OJ8|1|5|C|3668
8OJ8|1|5|G|3669
8OJ8|1|5|C|3670
8OJ8|1|5|G|3671
8OJ8|1|5|G|3672
8OJ8|1|5|C|3673
8OJ8|1|5|G|3674

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15