HL_8OM0_004

3D structure

PDB id

8OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

3.61 Å

Loop

Sequence

UUGCAUAACAAA

Length

12 nucleotides

Bulged bases

8OM0|1|A|G|179, 8OM0|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OM0|1|A|U|177
8OM0|1|A|U|178
8OM0|1|A|G|179
8OM0|1|A|C|180
8OM0|1|A|A|181
8OM0|1|A|U|182
8OM0|1|A|A|183
8OM0|1|A|A|184
8OM0|1|A|C|185
8OM0|1|A|A|186
8OM0|1|A|A|187
8OM0|1|A|A|188

Current chains

Chain A

Domains 1-5

Nearby chains