HL_8OO0_003

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_003 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.1122

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8OO0|1|1|C|91
8OO0|1|1|G|92
8OO0|1|1|G|93
8OO0|1|1|C|94
8OO0|1|1|G|95
8OO0|1|1|A|96
8OO0|1|1|G|97

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

Ribosomal protein L18-like protein

Chain La

Ribosomal protein L18e/L15P domain-containing protein

Chain Lo

60S ribosomal protein L44-like protein