HL_8OO0_005

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

8OO0|1|1|C|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1425

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8OO0|1|1|C|188
8OO0|1|1|U|189
8OO0|1|1|G|190
8OO0|1|1|G|191
8OO0|1|1|A|192
8OO0|1|1|A|193
8OO0|1|1|C|194
8OO0|1|1|G|195

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein