HL_8OO0_030
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGAAACGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8OO0|1|1|G|1332, 8OO0|1|1|A|1334, 8OO0|1|1|G|1337, 8OO0|1|1|U|1339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_030 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.276
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8OO0|1|1|U|1330
8OO0|1|1|A|1331
8OO0|1|1|G|1332
8OO0|1|1|A|1333
8OO0|1|1|A|1334
8OO0|1|1|A|1335
8OO0|1|1|C|1336
8OO0|1|1|G|1337
8OO0|1|1|A|1338
8OO0|1|1|U|1339
8OO0|1|1|G|1340
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LQ
- Ribosomal protein L18-like protein
- Chain Lq
- Putative 60S ribosomal protein
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