HL_8OO0_032

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_032 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.2036

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8OO0|1|1|A|1445
8OO0|1|1|U|1446
8OO0|1|1|G|1447
8OO0|1|1|A|1448
8OO0|1|1|G|1449
8OO0|1|1|A|1450
8OO0|1|1|A|1451
8OO0|1|1|C|1452
8OO0|1|1|U|1453

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein