HL_8OO0_035
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACUCGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_035 not in the Motif Atlas
- Geometric match to HL_7RQB_011
- Geometric discrepancy: 0.1782
- The information below is about HL_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70546.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 18
Unit IDs
8OO0|1|1|C|1547
8OO0|1|1|A|1548
8OO0|1|1|C|1549
8OO0|1|1|U|1550
8OO0|1|1|C|1551
8OO0|1|1|G|1552
8OO0|1|1|U|1553
8OO0|1|1|G|1554
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lr
- 60S ribosomal protein L41-A
Coloring options: