HL_8OO0_040

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUUCUG

Length

8 nucleotides

Bulged bases

8OO0|1|1|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_040 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1732

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8OO0|1|1|C|1739
8OO0|1|1|A|1740
8OO0|1|1|C|1741
8OO0|1|1|U|1742
8OO0|1|1|U|1743
8OO0|1|1|C|1744
8OO0|1|1|U|1745
8OO0|1|1|G|1746

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein

Chain Lk

60S ribosomal protein L38