HL_8OO0_054

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8OO0|1|1|G|2577

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_054 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1459

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8OO0|1|1|C|2575
8OO0|1|1|U|2576
8OO0|1|1|G|2577
8OO0|1|1|OMG|2578
8OO0|1|1|G|2579
8OO0|1|1|G|2580
8OO0|1|1|C|2581
8OO0|1|1|G|2582
8OO0|1|1|G|2583

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain Lb

60S ribosomal protein L29