HL_8OO0_056

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_056 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.1765

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8OO0|1|1|A|2632
8OO0|1|1|A|2633
8OO0|1|1|C|2634
8OO0|1|1|A|2635
8OO0|1|1|G|2636
8OO0|1|1|A|2637
8OO0|1|1|A|2638
8OO0|1|1|A|2639
8OO0|1|1|U|2640

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

Ribosome-associated molecular chaperone SSB1

Chain LJ

Putative ribosomal protein