HL_8OO0_057

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_057 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.144

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8OO0|1|1|C|2652
8OO0|1|1|A|2653
8OO0|1|1|A|2654
8OO0|1|1|A|2655
8OO0|1|1|A|2656
8OO0|1|1|G|2657
8OO0|1|1|G|2658
8OO0|1|1|G|2659

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

Ribosome-associated molecular chaperone SSB1

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein