HL_8OO0_070

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8OO0|1|1|C|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_070 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1356

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OO0|1|1|G|3244
8OO0|1|1|C|3245
8OO0|1|1|A|3246
8OO0|1|1|G|3247
8OO0|1|1|A|3248
8OO0|1|1|C|3249
8OO0|1|1|G|3250
8OO0|1|1|A|3251
8OO0|1|1|C|3252

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein