HL_8OO0_073

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUUAUACAG

Length

11 nucleotides

Bulged bases

8OO0|1|2|U|74, 8OO0|1|2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_073 not in the Motif Atlas

Homologous match to HL_8C3A_193

Geometric discrepancy: 0.525

The information below is about HL_8C3A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21248.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|C|70
8OO0|1|2|A|71
8OO0|1|2|A|72
8OO0|1|2|U|73
8OO0|1|2|U|74
8OO0|1|2|A|75
8OO0|1|2|U|76
8OO0|1|2|A|77
8OO0|1|2|C|78
8OO0|1|2|A|79
8OO0|1|2|G|80

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6