HL_8OO0_083

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

8OO0|1|2|A|449, 8OO0|1|2|A|451, 8OO0|1|2|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_083 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1695

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8OO0|1|2|C|447
8OO0|1|2|G|448
8OO0|1|2|A|449
8OO0|1|2|C|450
8OO0|1|2|A|451
8OO0|1|2|C|452
8OO0|1|2|G|453

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SY

40S ribosomal protein S24