HL_8OO0_085

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUUUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_085 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1466

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|A|517
8OO0|1|2|A|518
8OO0|1|2|U|519
8OO0|1|2|U|520
8OO0|1|2|U|521
8OO0|1|2|A|522
8OO0|1|2|A|523
8OO0|1|2|A|524
8OO0|1|2|U|525
8OO0|1|2|C|526
8OO0|1|2|C|527
8OO0|1|2|C|528
8OO0|1|2|U|529

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24