HL_8OO0_093

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUUUUUG

Length

9 nucleotides

Bulged bases

8OO0|1|2|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_093 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3591

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|U|1053
8OO0|1|2|U|1054
8OO0|1|2|A|1055
8OO0|1|2|U|1056
8OO0|1|2|U|1057
8OO0|1|2|U|1058
8OO0|1|2|U|1059
8OO0|1|2|U|1060
8OO0|1|2|G|1061

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1

Chain Sb

Ribosomal protein s27-like protein