HL_8OO0_101

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_101 not in the Motif Atlas

Geometric match to HL_1U9S_004

Geometric discrepancy: 0.1515

The information below is about HL_1U9S_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8OO0|1|2|C|1393
8OO0|1|2|U|1394
8OO0|1|2|C|1395
8OO0|1|2|A|1396
8OO0|1|2|A|1397
8OO0|1|2|G|1398

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-like protein