HL_8OO0_114
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCUCAGG
- Length
- 8 nucleotides
- Bulged bases
- 8OO0|1|1|C|941, 8OO0|1|1|A|944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_114 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3597
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|1|C|939
8OO0|1|1|C|940
8OO0|1|1|C|941
8OO0|1|1|U|942
8OO0|1|1|C|943
8OO0|1|1|A|944
8OO0|1|1|G|945
8OO0|1|1|G|946
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L44-like protein
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