HL_8OO0_115

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

8OO0|1|1|G|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_115 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2996

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8OO0|1|1|U|1108
8OO0|1|1|G|1109
8OO0|1|1|G|1110
8OO0|1|1|U|1111
8OO0|1|1|A|1112
8OO0|1|1|A|1113
8OO0|1|1|G|1114
8OO0|1|1|C|1115
8OO0|1|1|A|1116

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain Lb

60S ribosomal protein L29