HL_8OO0_117

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

8OO0|1|1|U|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_117 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3327

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8OO0|1|1|A|1659
8OO0|1|1|G|1660
8OO0|1|1|U|1661
8OO0|1|1|U|1662
8OO0|1|1|C|1663
8OO0|1|1|U|1664
8OO0|1|1|C|1665
8OO0|1|1|U|1666
8OO0|1|1|U|1667
8OO0|1|1|U|1668
8OO0|1|1|U|1669

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein