HL_8P03_008

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGUCGGC

Length

7 nucleotides

Bulged bases

8P03|1|2|C|240, 8P03|1|2|G|270

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P03_008 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3902

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8P03|1|2|G|237
8P03|1|2|G|238
8P03|1|2|U|239
8P03|1|2|C|240
8P03|1|2|G|270
8P03|1|2|G|271
8P03|1|2|C|272

Current chains

Chain 2

18S ribosomal RNA

Nearby chains