HL_8P03_021

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8P03|1|2|G|817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P03_021 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1211

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8P03|1|2|U|816
8P03|1|2|G|817
8P03|1|2|U|818
8P03|1|2|U|819
8P03|1|2|C|820
8P03|1|2|A|821
8P03|1|2|A|822
8P03|1|2|A|823
8P03|1|2|G|824

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

40S ribosomal protein S9

Chain a

40S ribosomal protein S24