HL_8P03_038

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

8P03|1|2|G|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P03_038 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3158

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P03|1|2|G|1653
8P03|1|2|U|1654
8P03|1|2|C|1655
8P03|1|2|A|1656
8P03|1|2|U|1657
8P03|1|2|A|1658
8P03|1|2|A|1659
8P03|1|2|G|1660
8P03|1|2|C|1661

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain V

40S ribosomal protein eS19

Chain W

40S ribosomal protein uS10

Chain e

40S ribosomal protein S29