HL_8P09_006

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8P09|1|2|U|160, 8P09|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_006 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1276

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8P09|1|2|G|156
8P09|1|2|U|157
8P09|1|2|A|158
8P09|1|2|A|159
8P09|1|2|U|160
8P09|1|2|U|161
8P09|1|2|C|162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24

Chain k

ATP binding cassette subfamily E member 1