HL_8P09_011

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

8P09|1|2|G|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P09|1|2|G|367
8P09|1|2|U|368
8P09|1|2|C|369
8P09|1|2|G|370
8P09|1|2|C|371
8P09|1|2|C|372
8P09|1|2|G|373
8P09|1|2|U|374
8P09|1|2|G|375
8P09|1|2|C|376
8P09|1|2|C|377

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11