HL_8P09_015

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8P09|1|2|C|492, 8P09|1|2|C|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_015 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1717

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8P09|1|2|C|488
8P09|1|2|G|489
8P09|1|2|A|490
8P09|1|2|C|491
8P09|1|2|C|492
8P09|1|2|C|493
8P09|1|2|G|494

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain a

40S ribosomal protein S24