HL_8P09_017

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_017 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1575

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P09|1|2|A|559
8P09|1|2|C|560
8P09|1|2|U|561
8P09|1|2|U|562
8P09|1|2|U|563
8P09|1|2|A|564
8P09|1|2|A|565
8P09|1|2|A|566
8P09|1|2|U|567
8P09|1|2|C|568
8P09|1|2|C|569
8P09|1|2|U|570
8P09|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain a

40S ribosomal protein S24