HL_8P09_021

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8P09|1|2|G|817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_021 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1263

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8P09|1|2|U|816
8P09|1|2|G|817
8P09|1|2|U|818
8P09|1|2|U|819
8P09|1|2|C|820
8P09|1|2|A|821
8P09|1|2|A|822
8P09|1|2|A|823
8P09|1|2|G|824

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

40S ribosomal protein S9

Chain a

40S ribosomal protein S24