HL_8P09_025

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_025 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1128

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P09|1|2|C|990
8P09|1|2|G|991
8P09|1|2|A|992
8P09|1|2|A|993
8P09|1|2|A|994
8P09|1|2|G|995

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

ribosomal protein uS15

Chain b

40S ribosomal protein S26