HL_8P16_082

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P16_082 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0922

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P16|1|2|G|617
8P16|1|2|C|618
8P16|1|2|U|619
8P16|1|2|C|620
8P16|1|2|A|621
8P16|1|2|A|622
8P16|1|2|C|623

Current chains

Chain 2

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4

Chain u

Small ribosomal subunit protein bS16