3D structure

PDB id
8P18 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
8P18|1|1|G|329, 8P18|1|1|A|330, 8P18|1|1|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P18_011 not in the Motif Atlas
Homologous match to HL_7RQB_012
Geometric discrepancy: 0.0948
The information below is about HL_7RQB_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.9
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

8P18|1|1|G|327
8P18|1|1|U|328
8P18|1|1|G|329
8P18|1|1|A|330
8P18|1|1|C|331
8P18|1|1|A|332
8P18|1|1|G|333
8P18|1|1|C|334
8P18|1|1|C|335

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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