HL_8P2F_014

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8P2F|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0747

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P2F|1|A|G|456
8P2F|1|A|G|457
8P2F|1|A|A|458
8P2F|1|A|C|459
8P2F|1|A|C|460
8P2F|1|A|A|461
8P2F|1|A|U|462
8P2F|1|A|C|463

Current chains

Chain A

23S ribosomal RNA

Nearby chains