HL_8P2F_042

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

8P2F|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_042 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0786

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8P2F|1|A|A|1673
8P2F|1|A|U|1674
8P2F|1|A|G|1675
8P2F|1|A|A|1676
8P2F|1|A|G|1677
8P2F|1|A|A|1678
8P2F|1|A|A|1679
8P2F|1|A|U|1680
8P2F|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains