HL_8P2F_051

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8P2F|1|A|A|2057, 8P2F|1|A|A|2058, 8P2F|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_051 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0855

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8P2F|1|A|G|2054
8P2F|1|A|U|2055
8P2F|1|A|G|2056
8P2F|1|A|A|2057
8P2F|1|A|A|2058
8P2F|1|A|G|2059
8P2F|1|A|A|2060
8P2F|1|A|U|2061
8P2F|1|A|G|2062
8P2F|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain H

50S ribosomal protein L3

Chain U

50S ribosomal protein L21