HL_8P2F_103

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

8P2F|1|a|A|1177, 8P2F|1|a|C|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_103 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3539

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P2F|1|a|U|1175
8P2F|1|a|G|1176
8P2F|1|a|A|1177
8P2F|1|a|C|1178
8P2F|1|a|A|1179
8P2F|1|a|A|1180
8P2F|1|a|A|1181

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S2