HL_8P2G_004

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2118

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8P2G|1|A|A|136
8P2G|1|A|G|137
8P2G|1|A|U|138
8P2G|1|A|U|139
8P2G|1|A|A|140
8P2G|1|A|U|141
8P2G|1|A|G|142
8P2G|1|A|U|143

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23