HL_8P2G_006

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8P2G|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0538

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P2G|1|A|G|197
8P2G|1|A|A|198
8P2G|1|A|A|199
8P2G|1|A|A|200
8P2G|1|A|C|201
8P2G|1|A|A|202
8P2G|1|A|U|203
8P2G|1|A|C|204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA

Chain O

50S ribosomal protein L15