HL_8P2G_010

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8P2G|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0928

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8P2G|1|A|C|348
8P2G|1|A|U|349
8P2G|1|A|G|350
8P2G|1|A|G|351
8P2G|1|A|A|352
8P2G|1|A|A|353
8P2G|1|A|A|354
8P2G|1|A|G|355

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L24