HL_8P2G_017

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

8P2G|1|A|U|590, 8P2G|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.0934

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

8P2G|1|A|C|587
8P2G|1|A|G|588
8P2G|1|A|U|589
8P2G|1|A|U|590
8P2G|1|A|A|591
8P2G|1|A|A|592
8P2G|1|A|U|593
8P2G|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21