HL_8P2G_042

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

8P2G|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_042 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0776

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8P2G|1|A|A|1673
8P2G|1|A|U|1674
8P2G|1|A|G|1675
8P2G|1|A|A|1676
8P2G|1|A|G|1677
8P2G|1|A|A|1678
8P2G|1|A|A|1679
8P2G|1|A|U|1680
8P2G|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains